HAMMER: Automated operation of Mass Frontier to construct
in-silico mass spectral fragmentation libraries

Jiarui Zhou1,†, Ralf J. M. Weber2,†, J. William Allwood2, Robert Mistrik4, Zexuan Zhu5, Zhen Ji5, Siping Chen6, Warwick B. Dunn2, Shan He3 and Mark R. Viant2,*

1College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou 310027, China;
2School of Biosciences and 3School of Computer Science, University of Birmingham, Birmingham, B15 2TT, United Kingdom;
4HighChem, Ltd., Leskova 11, 81104 Bratislava, Slovakia;
5Shenzhen City Key Laboratory of Embedded System Design, College of Computer Science and Software Engineering, 6School of Medicine, Shenzhen University, Shenzhen 518060, China;

Source code and executables: HAMMER_1_0.zip
Manual: hammer_manual.pdf
Videos: videos
CaseStudy I - Phenylalanine Metabolism (KEGG - map00360): Results (including Mass Frontier output files (*.mcr))
CaseStudy II - Top 200 most prescribed drugs in the USA in 2011: Results (including Mass Frontier output files (*.mcr))