simulator.Simulator Member List

This is the complete list of members for simulator.Simulator, including all inherited members.

_protocolFile	simulator.Simulator
agentGrid	simulator.Simulator
agentTimeStep	simulator.Simulator
attachmentMechanism	simulator.Simulator
checkAgentBirth()	simulator.Simulator
continueRunning	simulator.Simulator
create_Required_Number_Of_SelfAttaching_Agents(double cellAttachmentFrequency, XMLParser parser, int spIndex)	simulator.Simulator
createCharts()	simulator.Simulator
createDictionary()	simulator.Simulator
createFiles(String resultPath)	simulator.Simulator
createReactions()	simulator.Simulator
createSimulator()	simulator.Simulator
createSolutes()	simulator.Simulator
createSolvers()	simulator.Simulator
createSpecies()	simulator.Simulator
createWorld()	simulator.Simulator
detectInputFiles(String protocolFile)	simulator.Simulator
getParticleIndex(String particleName)	simulator.Simulator
getReaction(String aReactionName)	simulator.Simulator
getReactionIndex(String aReactionName)	simulator.Simulator
getResultPath()	simulator.Simulator
getSolute(String aSoluteName)	simulator.Simulator
getSoluteIndex(String aSoluteName)	simulator.Simulator
getSolver(String aSolverName)	simulator.Simulator
getSolverIndex(String aSolverName)	simulator.Simulator
getSpecies(String aSpeciesName)	simulator.Simulator
getSpeciesIndex(String aSpeciesName)	simulator.Simulator
invComp	simulator.Simulator	static
is3D	simulator.Simulator
isChemostat	simulator.Simulator	static
isFluctEnv	simulator.Simulator	static
multiEpi	simulator.Simulator	static
oneTimeAttachmentAgentBirth(XMLParser parser, int spIndex)	simulator.Simulator
particleDic	simulator.Simulator
plasmidList	simulator.Simulator
povRayWriter	simulator.Simulator
reactionDic	simulator.Simulator
reactionList	simulator.Simulator
recreateBulkConditions()	simulator.Simulator
recreateSpecies()	simulator.Simulator
result	simulator.Simulator
run()	simulator.Simulator
scanSpeedList	simulator.Simulator
selfAttachmentAgentBirth(XMLParser parser, int spIndex)	simulator.Simulator
simTimer	simulator.Simulator	static
simulationIsRunning()	simulator.Simulator
Simulator(String protocolFile, String resultPath)	simulator.Simulator
soluteDic	simulator.Simulator
soluteList	simulator.Simulator
solverDic	simulator.Simulator
solverList	simulator.Simulator
speciesDic	simulator.Simulator
speciesList	simulator.Simulator
step()	simulator.Simulator
updateChart()	simulator.Simulator
world	simulator.Simulator
writeReport()	simulator.Simulator