Version 1.2 (June 2013)
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simulator.agent.ActiveAgent Member List

This is the complete list of members for simulator.agent.ActiveAgent, including all inherited members.

_agentGridsimulator.agent.SpecialisedAgentprotected
_birthdaysimulator.agent.Agentprotected
_familysimulator.agent.Agentprotected
_genealogysimulator.agent.Agentprotected
_generationsimulator.agent.Agentprotected
_lastStepsimulator.agent.Agentprotected
_netGrowthRatesimulator.agent.ActiveAgentprotected
_netVolumeRatesimulator.agent.ActiveAgentprotected
_speciessimulator.agent.SpecialisedAgentprotected
_speciesParamsimulator.agent.SpecialisedAgentprotected
_totalMasssimulator.agent.ActiveAgentprotected
ActiveAgent()simulator.agent.ActiveAgent
addActiveReaction(Reaction aReaction, boolean useDefaultParam)simulator.agent.ActiveAgent
addReaction(Reaction aReaction, boolean useDefaultParam)simulator.agent.ActiveAgent
Agent()simulator.agent.Agent
allReactionssimulator.agent.ActiveAgent
clone()simulator.agent.ActiveAgent
createNewAgent()simulator.agent.ActiveAgentvirtual
deathsimulator.agent.SpecialisedAgent
die(boolean isStarving)simulator.agent.ActiveAgent
fitMassOnGrid(SpatialGrid aSpG, int catalystIndex)simulator.agent.ActiveAgent
fitMassOnGrid(SpatialGrid aSpG)simulator.agent.ActiveAgent
fitReacRateOnGrid(SpatialGrid aRateGrid, int reactionIndex)simulator.agent.ActiveAgent
getGridIndex()simulator.agent.SpecialisedAgent
getName()simulator.agent.SpecialisedAgent
getNetGrowth()simulator.agent.ActiveAgent
getParticleMass(int particleIndex)simulator.agent.ActiveAgent
getReactionKinetic(int indexReaction)simulator.agent.ActiveAgent
getSoluteYield(int indexReaction)simulator.agent.ActiveAgent
getSpecies()simulator.agent.SpecialisedAgent
getSpeciesParam()simulator.agent.ActiveAgent
getTotalMass()simulator.agent.ActiveAgent
getVolGrowth()simulator.agent.ActiveAgent
giveName()simulator.agent.Agent
grow()simulator.agent.ActiveAgentprotected
growthRatesimulator.agent.ActiveAgentprotected
initFromProtocolFile(Simulator aSim, XMLParser xmlMarkUp)simulator.agent.ActiveAgent
initFromResultFile(Simulator aSim, String[] singleAgentData)simulator.agent.ActiveAgent
interact(boolean MUTUAL, boolean pull, boolean seq, double gain)simulator.agent.SpecialisedAgent
internalStep()simulator.agent.ActiveAgentprotectedvirtual
isDeadsimulator.agent.SpecialisedAgent
isMoving()simulator.agent.SpecialisedAgent
makeKid()simulator.agent.Agent
move()simulator.agent.SpecialisedAgent
mutateAgent()simulator.agent.ActiveAgent
mutatePop()simulator.agent.ActiveAgent
nextFamilysimulator.agent.Agentprotectedstatic
particleMasssimulator.agent.ActiveAgent
particleYieldsimulator.agent.ActiveAgent
reactionActivesimulator.agent.ActiveAgentprotected
reactionKineticsimulator.agent.ActiveAgent
reactionKnownsimulator.agent.ActiveAgentprotected
recordGenealogy(Agent baby)simulator.agent.Agentprotected
registerBirth()simulator.agent.ActiveAgentvirtual
registerOnAllActiveReaction()simulator.agent.ActiveAgent
removeReaction(Reaction aPathway)simulator.agent.ActiveAgent
sendHeader()simulator.agent.ActiveAgent
sendName()simulator.agent.Agent
sendNewAgent()simulator.agent.SpecialisedAgentpure virtual
setNetGrowth(double value)simulator.agent.ActiveAgent
setSpecies(Species aSpecies)simulator.agent.SpecialisedAgent
setSpeciesParam(SpeciesParam aSpeciesParam)simulator.agent.SpecialisedAgent
soluteYieldsimulator.agent.ActiveAgent
SpecialisedAgent()simulator.agent.SpecialisedAgent
speciesIndexsimulator.agent.SpecialisedAgent
step()simulator.agent.Agent
switchOffreaction(Reaction aPathway)simulator.agent.ActiveAgent
switchOnReaction(Reaction aReaction)simulator.agent.ActiveAgent
unregisterFromAllActiveReactions()simulator.agent.ActiveAgent
updateMass()simulator.agent.ActiveAgent
updateSize()simulator.agent.ActiveAgent
willDetach()simulator.agent.SpecialisedAgent
writeOutput()simulator.agent.ActiveAgent
writePOVColorDefinition(FileWriter fr)simulator.agent.SpecialisedAgent