Creates a union with a box (the biofilm carrier) and spheres (the bacteria), creating a 3D scene for the PovRay rendering engine. More...

Inheritance diagram for povray.Biofilm3D:

Protected Member Functions
	Biofilm3D (Povray3DScene pov)
	Create a Biofilm3D scene from a specified POV-Ray 3D scene and initialise the output. More...

	Biofilm3D (Povray3DScene pov, int n)
	Create a Biofilm3D scene from a specified POV-Ray 3D scene and initialise the output and the array of cells to include. More...

void	addCell (float x, float y, float z, float rad, int r, int g, int b)
	Add a new cell to the POV-Ray 3D output. More...

void	toFile (FileWriter f) throws IOException
	Writes the cell positions to the POV-Ray file output stream. More...

void	modelStateToFile (FileWriter f) throws IOException
	Writes the current cells position in model to the POV-Ray file output stream by not using the _cells array, which is too memory consuming. More...

void	biofilmHeaderToFile (FileWriter f) throws IOException
	Writes the union open and the carrier to file. More...

void	biofilmFooterToFile (FileWriter f) throws IOException
	Writes the union translations and rotations to the POV-Ray file stream and closes the file. More...

void	particlesToFile (FileWriter f) throws IOException
	Write the particles only to the POV-Ray file output stream. More...

Detailed Description

Creates a union with a box (the biofilm carrier) and spheres (the bacteria), creating a 3D scene for the PovRay rendering engine.

Creates a union with a box (the biofilm carrier) and spheres (the bacteria), creating a 3D scene for the PovRay rendering engine

Author: João Xavier (xavie.nosp@m.rj@m.nosp@m.skcc..nosp@m.org), Memorial Sloan-Kettering Cancer Center (NY, USA); Laurent Lardon (lardo.nosp@m.nl@s.nosp@m.upagr.nosp@m.o.in.nosp@m.ra.fr), INRA, France

Constructor & Destructor Documentation

povray.Biofilm3D.Biofilm3D ( Povray3DScene pov )

protected

Create a Biofilm3D scene from a specified POV-Ray 3D scene and initialise the output.

Create a Biofilm3D scene from a specified POV-Ray 3D scene and initialise the output

Parameters

pov	A specific POV-Ray 3D scene to generate

povray.Biofilm3D.Biofilm3D	(	Povray3DScene	pov,
		int	n
	)

protected

Create a Biofilm3D scene from a specified POV-Ray 3D scene and initialise the output and the array of cells to include.

Create a Biofilm3D scene from a specified POV-Ray 3D scene and initialise the output and the array of cells to include

Parameters

pov	A specific POV-Ray 3D scene to generate
n	The number of cells that will be included in this scene

Member Function Documentation

void povray.Biofilm3D.addCell	(	float	x,
		float	y,
		float	z,
		float	rad,
		int	r,
		int	g,
		int	b
	)

protected

Add a new cell to the POV-Ray 3D output.

Add a new cell to the POV-Ray 3D output

Parameters

x	X coordinate of the cell to add
y	Y coordinate of the cell to add
z	Z coordinate of the cell to add
rad	Radius of the cell to add
r	Amount of red colour to use in creating the colour of this cell
g	Amount of green colour to use in creating the colour of this cell
b	Amount of blue colour to use in creating the colour of this cell

void povray.Biofilm3D.biofilmFooterToFile ( FileWriter f ) throws IOException

protected

Writes the union translations and rotations to the POV-Ray file stream and closes the file.

Writes the union translations and rotations to the POV-Ray file stream and closes the file

Parameters

f	POV-Ray output file stream to be written to

Exceptions

IOException Exception that is thrown if there are problems with this output stream

void povray.Biofilm3D.biofilmHeaderToFile ( FileWriter f ) throws IOException

protected

Writes the union open and the carrier to file.

Writes the union open and the carrier to file

Parameters

f	POV-Ray output file stream to be written to

Exceptions

IOException Exception that is thrown if there are problems with this output stream

void povray.Biofilm3D.modelStateToFile ( FileWriter f ) throws IOException

protected

Writes the current cells position in model to the POV-Ray file output stream by not using the _cells array, which is too memory consuming.

Writes the current cells position in model to the POV-Ray file output stream by not using the _cells array, which is too memory consuming

Parameters

f	POV-Ray output file stream to be written to

Exceptions

IOException Exception that is thrown if there are problems with this output stream

void povray.Biofilm3D.particlesToFile ( FileWriter f ) throws IOException

protected

Write the particles only to the POV-Ray file output stream.

Write the particles only to the POV-Ray file output stream

Parameters

f	POV-Ray output file stream to be written to

Exceptions

IOException Exception that is thrown if there are problems with this output stream

void povray.Biofilm3D.toFile ( FileWriter f ) throws IOException

protected

Writes the cell positions to the POV-Ray file output stream.

Writes the cell positions to the POV-Ray file output stream

Parameters

f	POV-Ray output file stream to be written to

Exceptions

IOException Exception that is thrown if there are problems with this output stream

The documentation for this class was generated from the following file:

/home/kieran/Dropbox/workspace/iDynoMiCS/src/povray/Biofilm3D.java

Protected Member Functions

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation