Here is a list of all class members with links to the classes they belong to:

- r -

• radiusOfACylinder() : utils.ExtraMath
• radiusOfASphere() : utils.ExtraMath
• random : utils.ExtraMath
• rateDec : simulator.agent.zoo.MultiEpisomeParam
• ratio : simulator.agent.LocatedGroup
• reactionActive : simulator.agent.zoo.Episome , simulator.agent.zoo.MultiEpisome , simulator.agent.ActiveAgent
• reactionDic : simulator.Simulator
• reactionIndex : simulator.reaction.Reaction
• reactionKinetic : simulator.agent.ActiveAgent , simulator.agent.ActiveParam
• reactionKnown : simulator.agent.zoo.MultiEpisome , simulator.agent.ActiveAgent , simulator.agent.zoo.Episome
• reactionList : simulator.Simulator
• reactionName : simulator.reaction.Reaction
• readBulk() : simulator.diffusionSolver.multigrid.MultigridSolute
• readConcentrationSeen() : simulator.reaction.Reaction
• readGeometry() : simulator.geometry.boundaryConditions.AllBC , simulator.geometry.boundaryConditions.BoundaryCyclic , simulator.geometry.boundaryConditions.IsBC
• readShape() : simulator.geometry.shape.IsShape , simulator.geometry.shape.Planar
• readSoluteGrid() : simulator.diffusionSolver.multigrid.MultigridSolute
• readSquareMatrixFromFile() : simulator.diffusionSolver.multigrid.MultigridUtils
• readyToFollowBoundary() : simulator.geometry.shape.IsShape , simulator.geometry.shape.Planar
• readyToSwitch() : simulator.agent.zoo.BactAdaptable
• realGrid : simulator.diffusionSolver.multigrid.SinglegridPressure , simulator.diffusionSolver.multigrid.MultigridSolute
• receivedPlasmid() : simulator.agent.zoo.MultiEpisome
• receptionLag : simulator.agent.zoo.EpisomeParam , simulator.agent.zoo.MultiEpisomeParam
• recordGenealogy() : simulator.agent.Agent
• recreateBulkConditions() : simulator.Simulator
• recreateSpecies() : simulator.Simulator
• refreshBioFilmGrids() : simulator.geometry.Domain , simulator.geometry.IsComputationDomain
• refreshBorder() : simulator.detachment.LevelSet
• refreshBoundary() : simulator.geometry.boundaryConditions.AllBC , simulator.geometry.boundaryConditions.BoundaryBulk , simulator.geometry.boundaryConditions.BoundaryConstant , simulator.geometry.boundaryConditions.BoundaryCyclic , simulator.geometry.boundaryConditions.BoundaryGasMembrane , simulator.geometry.boundaryConditions.BoundaryZeroFlux , simulator.geometry.boundaryConditions.IsBC , simulator.SoluteGrid
• refreshCarrier() : simulator.detachment.LevelSet
• refreshDiffBoundaries() : simulator.diffusionSolver.multigrid.MultigridSolute
• refreshDiffBoundary() : simulator.geometry.boundaryConditions.AllBC , simulator.geometry.boundaryConditions.BoundaryGasMembrane , simulator.geometry.boundaryConditions.IsBC
• refreshElement() : simulator.agent.LocatedGroup
• refreshGroupStatus() : simulator.AgentContainer
• refreshVolume() : simulator.agent.LocatedGroup
• register() : simulator.diffusionSolver.DiffusionSolver , simulator.agent.Species , simulator.reaction.Reaction
• registerBirth() : simulator.agent.SpecialisedAgent , simulator.agent.zoo.Episome , simulator.agent.zoo.MultiEpisome , simulator.AgentContainer , simulator.agent.LocatedAgent , simulator.agent.ActiveAgent , simulator.agent.Agent
• registerDeath() : simulator.AgentContainer
• registerMove() : simulator.AgentContainer
• registerOnAllActiveReaction() : simulator.agent.ActiveAgent
• relax() : simulator.diffusionSolver.multigrid.SinglegridPressure , simulator.diffusionSolver.Solver_multigrid , simulator.diffusionSolver.multigrid.MultigridSolute
• relaxGrid() : simulator.AgentContainer
• remove() : simulator.agent.LocatedGroup
• removeAgent() : simulator.reaction.Reaction
• removeAllDead() : simulator.AgentContainer
• removeLocated() : simulator.AgentContainer
• removeOnBorder() : simulator.AgentContainer
• removeReaction() : simulator.agent.ActiveAgent , simulator.agent.HasReaction
• reopenFile() : utils.LogFile
• repaintAndSave() : utils.Chart
• replication() : simulator.agent.zoo.MultiEpisome
• replicationSpeed : simulator.agent.zoo.MultiEpisomeParam
• reset() : simulator.geometry.ContinuousVector , idyno.SimTimer , simulator.agent.zoo.MultiEpisome , simulator.geometry.DiscreteVector
• resetFinest() : simulator.diffusionSolver.multigrid.MultigridSolute
• resetMove() : simulator.agent.LocatedGroup
• resetMultigridCopies() : simulator.diffusionSolver.multigrid.MultigridSolute , simulator.diffusionSolver.multigrid.SinglegridPressure
• resetReaction() : simulator.diffusionSolver.multigrid.MultigridSolute
• resetSoluteGrid() : simulator.diffusionSolver.multigrid.SinglegridPressure
• reshapeArray() : utils.GridOperations
• respondToConditions() : simulator.agent.zoo.BactAdaptable
• restrict() : simulator.diffusionSolver.multigrid.MultigridUtils
• restrict2() : simulator.diffusionSolver.multigrid.MultigridUtils
• restrictBoundaryLayer() : simulator.diffusionSolver.multigrid.MultigridUtils
• restrictBoundaryLayer2() : simulator.diffusionSolver.multigrid.MultigridUtils
• restrictToCoarsest() : simulator.diffusionSolver.multigrid.MultigridSolute
• result : simulator.Simulator
• ResultFile() : utils.ResultFile
• returnGroupInVoxel() : simulator.AgentContainer
• returnSimulationLength() : idyno.SimTimer
• rtol : simulator.diffusionSolver.Solver_chemostat
• run() : simulator.Simulator