Jan-Ulrich Kreft: BacSim

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Movie: Capsule formation by ammonia oxidisers at a high rate

Animated gif

Watch the biofilm grow from 10 cells per species at time zero to 30,000 min (3 weeks), with one frame per 1,000 min. All frames were rendered with POV-Ray. Each cell is shown as a sphere. The ammonia oxidisers ("Nitroso") are blue, and the capsules surrounding them are bluish (cyan); the nitrite oxidisers ("Nitro") are red. See the reaction scheme below. The grey box at the bottom is the inert substratum. Note the wrapped around boundaries in the horizontal direction. Scale: total width of the system = 200 µm.

As with EPS production at a high rate, producing cells shrink and eventually die in the deep end of the biofilm where not enough oxygen penetrates to sustain the energy expenditure of EPS production. Since capsules are EPS material that stays attached to the cells, cells become more evenly separated from each other compared with EPS production.

Reactions involved in nitrification