Jan-Ulrich Kreft: BacSim

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Movie: Capsule formation by ammonia oxidisers at a low rate

Animated gif

Watch the biofilm grow from 10 cells per species at time zero to 30,000 min (3 weeks), with one frame per 1,000 min. All frames were rendered with POV-Ray. Each cell is shown as a sphere. The ammonia oxidisers ("Nitroso") are blue, and the capsules surrounding them are bluish (cyan); the nitrite oxidisers ("Nitro") are red. See the reaction scheme below. The grey box at the bottom is the inert substratum. Note the wrapped around boundaries in the horizontal direction. Scale: total width of the system = 200 µm.

As with EPS production at a low rate, no death occurs since cells don't waste too much energy on capsule formation. Cells here are very evenly spaced and just not that dense as without EPS production or capsule formation.

Reactions involved in nitrification