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void | init (Element defMarkUp) |
| Initialise the kinetic, reading in kinetic parameter information from the protocol file and calculating any auxillaries needed for easing the kinetic calculation. More...
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void | initFromAgent (Element defMarkUp, double[] kineticParam, int paramIndex) |
| Initialise the reaction from a parent of the agent. More...
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double | kineticValue (double solute, double[] paramTable, int index) |
| Calculate the value of the kinetic from a given level of solute, an array containing parameters relating to the reaction, and an index to this array. More...
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double | kineticValue (double solute) |
| Calculate the value of the kinetic for a given level of solute. More...
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double | kineticDiff (double solute, double[] paramTable, int index) |
| Used to compute marginal difference kinetic values for a given solute level. More...
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double | kineticDiff (double solute) |
| Used to compute marginal difference kinetic values for a given solute level. More...
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Model a reaction using Linear Kinetics.
void simulator.reaction.kinetic.LinearKinetic.init |
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Element |
defMarkUp | ) |
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virtual |
Initialise the kinetic, reading in kinetic parameter information from the protocol file and calculating any auxillaries needed for easing the kinetic calculation.
Initialise the kinetic, reading in kinetic parameter information from the protocol file and calculating any auxillaries needed for easing the kinetic calculation
- Parameters
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defMarkUp | XML tags that define this kinetic in the protocol file |
Implements simulator.reaction.kinetic.IsKineticFactor.
double simulator.reaction.kinetic.LinearKinetic.kineticValue |
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double |
solute, |
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double[] |
paramTable, |
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int |
index |
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) |
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virtual |
Calculate the value of the kinetic from a given level of solute, an array containing parameters relating to the reaction, and an index to this array.
Calculate the value of the kinetic from a given level of solute, an array containing parameters relating to the reaction, and an index to this array
- Parameters
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solute | Double stating the level of that solute |
paramTable | Array of parameters relating to this reaction |
index | An index to the parameter array |
- Returns
- Double value stating the value of the kinetic for this level of solute
Implements simulator.reaction.kinetic.IsKineticFactor.