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class | ActiveAgent |
| Extension of Agent and SpecialisedAgent - adds reaction information to model agent involvement in reactions. More...
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class | ActiveParam |
| Extends SpeciesParam, adding parameters used to simulate an agents involvement in a reaction. More...
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class | Agent |
| Major class of iDynoMiCS - defines the agents that are involved in an iDynoMiCS simulation. Extended by a number of agent types. More...
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interface | HasReaction |
| Interface of methods that should be implemented for agent classes that are involved in solute reactions. More...
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interface | HasSpecies |
| Interface for species classes, stating the methods that these classes should include. More...
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class | InfoAgent |
| Abstract class used for declaring Episome and MultiEpisome objects. More...
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class | LocatedAgent |
| Extends ActiveAgent by adding functionality to control agent grid location, agent shoving, agent death and division, and agent movement. More...
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class | LocatedGroup |
| Object to hold a group of agents in one location on the agent grid. More...
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class | LocatedParam |
| Extends ActiveParam by adding location and behaviour parameters to a defined agent. More...
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class | SpecialisedAgent |
| Extension of Agent class, adds location and parameter information for an object of a particular species in the simulation. More...
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class | Species |
| Creates and manages the species that are to be included in an iDynoMiCS simulation. More...
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class | SpeciesParam |
| Class used to store and set parameters specific for a species. Can be extended to add additional parameters. More...
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