Inheritance diagram for simulator.agent.zoo.MultiEpisomeParam:

Public Member Functions
void	init (Simulator aSim, XMLParser aSpeciesRoot)

HashMap< String, double[]>	getSoluteYield ()

void	callParamMutator (String paramName, double value)

Public Member Functions inherited from simulator.agent.ActiveParam
void	init (Simulator aSim, XMLParser aSpeciesRoot)
	Stores the reaction parameters for an active species and calculates the particle density of compounds involved in the reaction. More...

Public Member Functions inherited from simulator.agent.SpeciesParam
void	init (Simulator aSim, XMLParser aSpeciesRoot)
	Read in specific parameters for this species, changing the default if required. More...

Public Attributes
boolean	isHighCopy = false

int	nCopy

double	pilusLength = 0

double	exchangeLag = 0

double	receptionLag = 0

double	replicationSpeed = .26

double	lossProbability = 0

double	hotLag = 2

String	plasmidName

ArrayList< String >	hostCompatibilityMarkers = new ArrayList<String>()

ArrayList< String >	plasmidCompatibilityMarkers = new ArrayList<String>()

double	transferProb = 0

double	scanSpeed =0

double	initialCost =0

double	rateDec =0

double	basalCost =0

Public Attributes inherited from simulator.agent.ActiveParam
double[]	particleDensity

double[][]	soluteYield

double[][]	particleYield

double[][]	reactionKinetic

double[]	lysisYield

Public Attributes inherited from simulator.agent.SpeciesParam
double	initialMassCV = .1

Member Function Documentation

void simulator.agent.zoo.MultiEpisomeParam.callParamMutator	(	String	paramName,
		double	value
	)

HashMap<String, double[]> simulator.agent.zoo.MultiEpisomeParam.getSoluteYield ( )

void simulator.agent.zoo.MultiEpisomeParam.init	(	Simulator	aSim,
		XMLParser	aSpeciesRoot
	)

Called during creation of the species

Member Data Documentation

double simulator.agent.zoo.MultiEpisomeParam.basalCost =0

double simulator.agent.zoo.MultiEpisomeParam.exchangeLag = 0

ArrayList<String> simulator.agent.zoo.MultiEpisomeParam.hostCompatibilityMarkers = new ArrayList<String>()

double simulator.agent.zoo.MultiEpisomeParam.hotLag = 2

double simulator.agent.zoo.MultiEpisomeParam.initialCost =0

boolean simulator.agent.zoo.MultiEpisomeParam.isHighCopy = false

double simulator.agent.zoo.MultiEpisomeParam.lossProbability = 0

int simulator.agent.zoo.MultiEpisomeParam.nCopy

double simulator.agent.zoo.MultiEpisomeParam.pilusLength = 0

ArrayList<String> simulator.agent.zoo.MultiEpisomeParam.plasmidCompatibilityMarkers = new ArrayList<String>()

String simulator.agent.zoo.MultiEpisomeParam.plasmidName

double simulator.agent.zoo.MultiEpisomeParam.rateDec =0

double simulator.agent.zoo.MultiEpisomeParam.receptionLag = 0

double simulator.agent.zoo.MultiEpisomeParam.replicationSpeed = .26

double simulator.agent.zoo.MultiEpisomeParam.scanSpeed =0

double simulator.agent.zoo.MultiEpisomeParam.transferProb = 0

The documentation for this class was generated from the following file:

/home/kieran/Dropbox/workspace/iDynoMiCS/src/simulator/agent/zoo/MultiEpisomeParam.java